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Braiding a molecular knot with eight crossings.

Friday, January 20th, 2017

This is one of those posts of a molecule whose very structure is interesting enough to merit a picture and a 3D model. The study[1] reports a molecular knot with the remarkable number of eight crossings.

The DOI for the 3D model is 10.5517/CCDC.CSD.CC1M85Y0 (or click on the image above). Such topology intersects with work we did a few years back on high-order crossings in fully conjugated π-systems[2], which were then illustrated[3] with hypothetical charged higher order annulenes exhibiting linking numbers Lk of up to 6π. A fully π-conjugated system, also with a linking number in the π-framework of 6π but in the form of a trefoil braid was even suggested on this blog, with a common feature of a central templating atom (a cation rather than an anion). Another example of a previously reported pentadecanuclear manganese metallacycle[4] was also assigned a linking number of 6π.

The molecule above is not completely π-conjugated around the braid and so special properties related to aromaticity and associated ring currents resulting from the topology of the cyclic conjugation[5] are not expected to accrue in the eight-crossing molecular braid[1]. We might also look forward to examples of the characterisation of braids with an odd-number of crossings such as trefoils, pentafoils, heptafoils, etc, as associated with the name Möbius.

References

  1. J.J. Danon, A. Krüger, D.A. Leigh, J. Lemonnier, A.J. Stephens, I.J. Vitorica-Yrezabal, and S.L. Woltering, "Braiding a molecular knot with eight crossings", Science, vol. 355, pp. 159-162, 2017. https://doi.org/10.1126/science.aal1619
  2. S.M. Rappaport, and H.S. Rzepa, "Intrinsically Chiral Aromaticity. Rules Incorporating Linking Number, Twist, and Writhe for Higher-Twist Möbius Annulenes", Journal of the American Chemical Society, vol. 130, pp. 7613-7619, 2008. https://doi.org/10.1021/ja710438j
  3. C.S. Wannere, H.S. Rzepa, B.C. Rinderspacher, A. Paul, C.S.M. Allan, H.F. Schaefer, and P.V.R. Schleyer, "The Geometry and Electronic Topology of Higher-Order Charged Möbius Annulenes", The Journal of Physical Chemistry A, vol. 113, pp. 11619-11629, 2009. https://doi.org/10.1021/jp902176a
  4. H.S. Rzepa, "Linking Number Analysis of a Pentadecanuclear Metallamacrocycle: A Möbius-Craig System Revealed", Inorganic Chemistry, vol. 47, pp. 8932-8934, 2008. https://doi.org/10.1021/ic800987f
  5. P.L. Ayers, R.J. Boyd, P. Bultinck, M. Caffarel, R. Carbó-Dorca, M. Causá, J. Cioslowski, J. Contreras-Garcia, D.L. Cooper, P. Coppens, C. Gatti, S. Grabowsky, P. Lazzeretti, P. Macchi, Ã. Martín Pendás, P.L. Popelier, K. Ruedenberg, H. Rzepa, A. Savin, A. Sax, W.E. Schwarz, S. Shahbazian, B. Silvi, M. Solà, and V. Tsirelson, "Six questions on topology in theoretical chemistry", Computational and Theoretical Chemistry, vol. 1053, pp. 2-16, 2015. https://doi.org/10.1016/j.comptc.2014.09.028