Posts Tagged ‘cyano’

Janus mechanisms (the past and the future): Reactions of the diazonium cation.

Saturday, December 11th, 2010

Janus was the mythological Roman god depicted as having two heads facing opposite directions, looking simultaneously into the past and the future. Some of the most ancient (i.e. 19th century) known reactions can be considered part of a chemical mythology; perhaps it is time for a Janus-like look into their future.

Reaction of the diazonium cation with cyanide.

The phenyl diazonium ion is often introduced early in most chemistry teaching; it is used to produce spectacularly coloured solutions from colourless starting materials and makes an immediate impression.1 The reaction of this species with cyanide salts often appears in introductory courses of aromatic chemistry as a means of producing aryl cyanides. It entered the text books around a century ago as the Sandmeyer reaction (using copper(I)cyanide, but it is also reported as occurring using more ionic cyanide salts as well).2 The mechanism of the ionic reaction however has been given little attention recently. One common representation is as a unimolecular reaction to lose nitrogen gas forming an arene cation, which is mechanistically then followed by fast quenching with cyanide anion to replace the diazo group with the cyano group.

Computational modelling of such ion-pair reactions has now become possible,3 and is going to be used here to peek into the future. A B3LYP/6-311G(d,p)/SCRF calculation shows a transition state involving C-N cleavage, with an adjacent cyanide ion doing rather more than merely spectating. The dipole moment of the transition state is 11D (in acetonitrile as solvent). The structure shows the ion-pair endeavouring to minimise the charge separation, with the cyanide approaching at a rather different angle from the departing diazo group. This sort of SN2 displacement at an sp2 (as opposed to sp3) carbon centre is mechanistically quite unusual.4 The free energy of activation for this mechanism is calculated as 24.9 kcal/mol, which is slightly worryingly high for what is considered a room-temperature reaction (the same method gave quite reasonable barriers for another ion-pair mechanism3).

Phenyldiazonium cation + cyanide anion; substitution mechanism. Click for 3D

So time to see if all is what it might seem. There are many other mechanisms that might be explored; below is what seems quite a reasonable one, the elimination of the diazo-group with accompanying proton abstraction to form a benzyne. This transition state has an activation free energy of 17.8 kcal/mol, a much more reasonable value for a room temperature reaction. The dipole moment is 17.1D (the reactant ion-pair is 19.7D).

Benzyne mechanism, in acetonitrile solvent. Click for 3D

So could it be that this veritable reaction actually proceeds via a different mechanism from that in the text books? Benzyne would be formed as a very reactive intermediate, and presumably in the presence of cyanide anions, it would react by nucleophilic addition to form benzonitrile, the same product as before. How could this be verified? Well, if the carbon atom carrying the diazonium group were to be labelled as say 14C, the original mechanism would carry all that label at one carbon in the benzonitrile product. But the benzyne mechanism would scramble the label between two carbons. Janus therefore sees the future in the shape of a useful experiment which could be done to distinguish the two alternative mechanisms.

It is also noteworthy that the two alternative transition states have different dipole moments, and so are affected differently by solvent polarity. Thus in water, the activation free energies are respectively (substitution/elimination) 25.1 and 17.9, whilst in benzene as solvent they are much higher: 48.7 and 39.0 kcal/mol. The effect of the solvent upon the structure of the transition state is also considerable. Below is shown the benzyne elimination mechanism as calculated in the non polar benzene as solvent. Note how the proton transfer is much more advanced, and the C…N cleavage is less advanced than in acetonitrile as solvent.

Benzyne transition state, in benzene solvent. Click for 3D

We are seeing something of a revolution here. Gradually, the mechanisms of the reaction library built up over the last 100 years or so are increasingly being explored using quantitative calculations. It seems entirely likely that more surprises will crop up.


  1. At the age of ~12 I was introduced to chemistry via this reaction, an exposure at least in part why almost 50 years later I am still doing chemistry and why I write this blog.
  2. Kazitsyna, L. A.; Gruzdneva, V. N. Vestnik Moskovskogo Universiteta, Seriya 2: Khimiya, 1975, 16, 331-7.
  3. The ion-pair mechanism of the racemisation of iso-bornyl chloride, another ancient and almost mythological reaction, has recently been studied in this manner; J. Kong, P. v. R. Schleyer and H. S. Rzepa, “Successful Computational Modeling of Iso-bornyl Chloride Ion-Pair Mechanisms”, J. Org. Chem., 2010, DOI: 10.1021/jo100920e
  4. Z. Wu and R. Glaser, “Ab Initio Study of the SN1Ar and SN2Ar Reactions of Benzenediazonium Ion with Water. On the Conception of “Unimolecular Dediazoniation” in Solvolysis Reactions”,  J. Am. Chem. Soc., 2004, DOI: 10.1021/ja047620a




Archived as Henry Rzepa, Janus mechanisms (the past and the future): Reactions of the diazonium cation, URL:http://www.ch.ic.ac.uk/rzepa/blog/?p=3003. Accessed: 2010-12-12. (Archived by WebCite® at http://www.webcitation.org/5uv90cJnU)

Anatomy of an asymmetric reaction. The Strecker synthesis, part 2.

Wednesday, May 26th, 2010

In the first part of the post on this topic, I described how an asymmetric sulfoxide could be prepared as a pure enantiomer using a chiral oxygen transfer reagent. In the second part, we now need to deliver a different group, cyano, to a specific face of the previously prepared sulfoxide-imine. The sulfoxide is now acting as a chiral auxilliary, and helps direct the delivery of the cyanide group to specifically one face of the imine rather than the other. After removal of the aluminum carrier for the cyano group and hydrolysis of the cyano group to a carboxylic acid group, we end up with an enantiomerically pure amino acid.

The Strecker synthsis: asymmetric delivery of cyanide anion. Click for 3D model of transition state

Two transition states can be computed (ωB97XD/6-311G(d,p)/SCRF[dichloromethane], see DOI 10042/to-4927) and the S,S(S) diastereomer is found to be  1.35 kcal/mol lower in total free energy than the R,S(S) isomer. This agrees with the observed specificity. Again, a reason for the specificity needs identifying, and again we use  AIM.

AIM analysis for the asymmetric delivery of cyanide to an imine, S,S(S) form.

In the favoured diastereomer, a BCP or bond-critical-point (green arrow above) can be found connecting a hydrogen from an aryl group to the oxygen of the Al-OMe group  via a weak hydrogen bond (H…O distance 2.25Å). In the disfavoured form, this interaction vanishes, and is instead replaced by a repulsive close N=CH…C-aryl contact of 2.49Å (for which there is no  BCP, red arrow below).

Disfavoured transition state. R,S(S) form.

The take home message from these two posts is that quite unusual interactions may often be responsible for asymmetric induction in a stereospecific reaction, and that helpful clues to these interactions may well be derived from an AIM analysis. Indeed, anyone doing stereospecific synthesis in the lab should be familiar with these methods! You have to be a jack-of-all-trades nowadays to keep up!