{"id":14718,"date":"2015-10-23T14:09:30","date_gmt":"2015-10-23T13:09:30","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=14718"},"modified":"2015-10-23T14:09:30","modified_gmt":"2015-10-23T13:09:30","slug":"interactions-responsible-for-the-lowest-energy-structure-of-the-trimer-of-fluoroethanol","status":"publish","type":"post","link":"https:\/\/www.rzepa.net\/blog\/?p=14718","title":{"rendered":"Interactions responsible for the lowest energy structure of the trimer of fluoroethanol."},"content":{"rendered":"
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Steve Bachrach on his own blog<\/a> has commented on a recent article[1]<\/a><\/span> discussing the structure of the trimer of fluoroethanol. Rather than the expected triangular form with three OH—O hydrogen bonds, the lowest energy form only had two such bonds, but it matched the microwave data much better. Here I explore this a bit more.<\/p>\n

The stability of the lowest energy form, as is evident from the title of the article, was attributed to unusual H-Bond topology and bifurcated H-bonds<\/i> as teased out from bond critical points in the QTAIM analysis of the topology of the electron density. Here I add to this analysis by displaying the computed NCI (non-covalent-interaction)[2]<\/a><\/span> surfaces, as you might see in the comment I posted on Steve’s blog. In essence, the QTAIM had revealed bond paths<\/i> connecting an oxygen to a H-C and also a bifurcation from an F to two H-C atoms, shown with orange lines in the diagram there. What might an NCI analysis<\/a> reveal? The analysis[3]<\/a><\/span> is shown below, where I have added orange arrows to indicate the location of these bond paths. The arrows point to an NCI feature which corresponds to a weak dispersion-like stabilisation.<\/p>\n

\"Click

Click for 3D<\/p><\/div>\n

However, as you can spot from the diagram above (and inspect in a 3D sense if you click on the diagram above to load a 3D Jmol model), there are many more regions where NCI features appear. The most obvious are the blue-coded ones, which in fact represent the conventional O…HO hydrogen bonds, but there are plenty of others as well, including a cyan one which is not part of the published attributions. I will recapitulate my comment on Steve’s blog; the point I make here is that apart from the two regions which have been picked out in the article as responsible for stabilisation of the low energy structure, there are around 4-5 OTHER regions that also may be stabilising but for which there is no corresponding critical point in the density. So whilst the above origins are not incorrect, they may well be very incomplete!<\/i>.<\/p>\n

There is a tendency to only highlight features which can be named<\/i>, and perhaps to ignore or pay less attention to those which have no name. The latter may in fact be more common than we imagine, and cumulatively they can often have a big impact.<\/p>\n

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Postscript:<\/b> A structure has recently been reported[4]<\/a><\/span>,[5]<\/a><\/span> illustrating an exceptionally strong OH…F interaction of 1.52Å. This is noteworthy because such hydrogen bonds are rarely strong and indeed even their very existence is controversial. The cyan NCI region mentioned above is just such an interaction (of length ~2.0Å).<\/p>\n

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References<\/h2>\n
  1. J. Thomas, X. Liu, W. J\u00e4ger, and Y. Xu, \"Unusual H\u2010Bond Topology and Bifurcated H\u2010bonds in the 2\u2010Fluoroethanol Trimer\", Angewandte Chemie International Edition<\/i>, vol. 54, pp. 11711-11715, 2015. https:\/\/doi.org\/10.1002\/anie.201505934<\/a>\n\n<\/li>\n
  2. J. Contreras-Garc\u00eda, W. Yang, and E.R. Johnson, \"Analysis of Hydrogen-Bond Interaction Potentials from the Electron Density: Integration of Noncovalent Interaction Regions\", The Journal of Physical Chemistry A<\/i>, vol. 115, pp. 12983-12990, 2011. https:\/\/doi.org\/10.1021\/jp204278k<\/a>\n\n<\/li>\n
  3. H.S. Rzepa, and H.S. Rzepa, \"C 6 H 15 F 3 O 3\", 2015. https:\/\/doi.org\/10.14469\/ch\/191558<\/a>\n\n<\/li>\n
  4. M.D. Struble, C. Kelly, M.A. Siegler, and T. Lectka, \"Search for a Strong, Virtually \u201cNo\u2010Shift\u201d Hydrogen Bond: A Cage Molecule with an Exceptional OH\u22c5\u22c5\u22c5F Interaction\", Angewandte Chemie International Edition<\/i>, vol. 53, pp. 8924-8928, 2014. https:\/\/doi.org\/10.1002\/anie.201403599<\/a>\n\n<\/li>\n
  5. Struble, Mark D.., Kelly, Courtney., Siegler, Maxime A.., and Lectka, Thomas., \"CCDC 991440: Experimental Crystal Structure Determination\", 2014. https:\/\/doi.org\/10.5517\/cc128nyy<\/a>\n\n<\/li>\n<\/ol>\n\n<\/div> ","protected":false},"excerpt":{"rendered":"

    Steve Bachrach on his own blog has commented on a recent article discussing the structure of the trimer of fluoroethanol. Rather than the expected triangular form with three OH—O hydrogen bonds, the lowest energy form only had two such bonds, but it matched the microwave data much better. Here I explore this a bit more. […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[6],"tags":[1560,510,1573,1459,1589,1590,760,348],"class_list":["post-14718","post","type-post","status-publish","format-standard","hentry","category-interesting-chemistry","tag-atoms-in-molecules","tag-chemical-bonding","tag-diagram","tag-hydrogen-bond","tag-low-energy-structure","tag-lowest-energy-form","tag-microwave","tag-steve-bachrach"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p1gPyz-3Po","jetpack_likes_enabled":true,"_links":{"self":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/14718","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=14718"}],"version-history":[{"count":0,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/14718\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=14718"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=14718"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=14718"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}