{"id":15812,"date":"2012-12-24T16:07:43","date_gmt":"2012-12-24T16:07:43","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=8776"},"modified":"2012-12-24T16:07:43","modified_gmt":"2012-12-24T16:07:43","slug":"how-to-tame-an-oxidant-the-mysteries-of-tpap-tetra-n-propylammonium-perruthenate-2","status":"publish","type":"post","link":"https:\/\/www.rzepa.net\/blog\/?p=15812","title":{"rendered":"How to tame an oxidant: the mysteries of &quot;tpap&quot; (tetra-n-propylammonium perruthenate)."},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"15812\">\n<p><em><strong>tpap<\/strong><\/em><span id=\"cite_ITEM-15812-0\" name=\"citation\"><a href=\"#ITEM-15812-0\">[1]<\/a><\/span>, as it is <a href=\"http:\/\/en.wikipedia.org\/wiki\/Tetrapropylammonium_perruthenate\" target=\"_blank\">affectionately known<\/a>, is a ruthenium-based oxidant of primary alcohols to aldehydes discovered by Griffith and Ley. Whereas ruthenium tetroxide (RuO<sub>4<\/sub>) is a voracious oxidant<span id=\"cite_ITEM-15812-1\" name=\"citation\"><a href=\"#ITEM-15812-1\">[2]<\/a><\/span>, its radical anion countered by a tetra-propylammonium cation is considered a more moderate animal<span id=\"cite_ITEM-15812-2\" name=\"citation\"><a href=\"#ITEM-15812-2\">[3]<\/a><\/span>. In this post, I want to try to use quantum mechanically derived energies as a pathfinder for exploring what might be going on (or a reality-check if you like).\u00a0<\/p>\n<p>&nbsp;<\/p>\n<p><img decoding=\"async\" data-attachment-id=\"8777\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8777\" data-orig-file=\"https:\/\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap.svg\" data-orig-size=\"\" data-comments-opened=\"1\" data-image-meta=\"[]\" data-image-title=\"tpap\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap.svg\" data-large-file=\"https:\/\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap.svg\" class=\"aligncenter size-full wp-image-8777\" alt=\"tpap\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap.svg\" width=\"420\" \/><\/p>\n<p>A basic (<em>i.e.<\/em> simple) mechanism for oxidation of an alcohol by\u00a0RuO<sub>4<\/sub> is shown above. Here I reality-check this mechanistic pathway with the help of \u03c9B97XD\/Def2-SVPF\/SCRF=dichloromethane calculations. I should point out that since the mechanism is going to involve ion-pairs, it is particularly important to adopt a solvent=corrected model from the outset<span id=\"cite_ITEM-15812-3\" name=\"citation\"><a href=\"#ITEM-15812-3\">[4]<\/a><\/span>. <a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.105494\" target=\"_blank\">TS1<\/a> is the transition state for addition of the alcohol to the metal, a process which involves a synchronous proton transfer for the singlet electronic state.<\/p>\n<table class=\"aligncenter\" border=\"0\" align=\"center\">\n<tbody>\n<tr>\n<td>\n<div id=\"attachment_8779\" style=\"width: 210px\" class=\"wp-caption aligncenter\"><img data-recalc-dims=\"1\" decoding=\"async\" aria-describedby=\"caption-attachment-8779\" data-attachment-id=\"8779\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8779\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?fit=456%2C344&amp;ssl=1\" data-orig-size=\"456,344\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"tpap-ts1\" data-image-description=\"\" data-image-caption=\"&lt;p&gt;TS1. Click for  3D&lt;\/p&gt;\n\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?fit=300%2C226&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?fit=450%2C339&amp;ssl=1\" class=\" wp-image-8779 \" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([500,500],'load wp-content\/uploads\/2012\/12\/RuO5+ethanol-PT-550.169836.log;frame 11;connect (atomno=13) (atomno=5) PARTIAL;connect (atomno=13) (atomno=3) PARTIAL;connect (atomno=3) (atomno=12) PARTIAL;vectors on;vectors 4;vectors scale 5.0; color vectors magenta; vibration 20;animation mode loop;');\" alt=\"TS1. Click for 3D\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?w=200\"  srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?w=456&amp;ssl=1 456w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?resize=300%2C226&amp;ssl=1 300w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><p id=\"caption-attachment-8779\" class=\"wp-caption-text\">TS1 as a singlet. Click for 3D<\/p><\/div>\n<\/td>\n<td><img data-recalc-dims=\"1\" decoding=\"async\" data-attachment-id=\"8785\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8785\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS1.gif?fit=516%2C303&amp;ssl=1\" data-orig-size=\"516,303\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"tpap-TS1\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS1.gif?fit=300%2C176&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS1.gif?fit=450%2C264&amp;ssl=1\" class=\"aligncenter size-full wp-image-8785\" alt=\"tpap-TS1\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS1.gif?w=200\"  \/><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>Next comes <a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.105482\" target=\"_blank\">TS2<\/a>, which involves a hydride abstraction with concomitant reduction of the oxidation number of Ru(VIII) to Ru(VI). It is higher in free energy than TS1 by 1.1 kcal\/mol. The barrier corresponds to \u0394G<sub>298<\/sub><sup>\u2021<\/sup>\u00a037.1 kcal\/mol.\u00a0The process completes by low energy elimination of water (<a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.105597\" target=\"_blank\">TS3<\/a>) from the Ru(VI) species to give RuO<sub>3<\/sub>, which either undertakes further oxidisation to give RuO<sub>2<\/sub>, or might instead be re-oxidized back to RuO<sub>4<\/sub>\u00a0by oxygen (or an amine N-oxide) to complete a catalytic cycle.<\/p>\n<table class=\"aligncenter\" border=\"0\" align=\"center\">\n<tbody>\n<tr>\n<td>\n<div id=\"attachment_8779\" style=\"width: 210px\" class=\"wp-caption aligncenter\"><img data-recalc-dims=\"1\" decoding=\"async\" aria-describedby=\"caption-attachment-8779\" data-attachment-id=\"8779\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8779\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?fit=456%2C344&amp;ssl=1\" data-orig-size=\"456,344\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"tpap-ts1\" data-image-description=\"\" data-image-caption=\"&lt;p&gt;TS1. Click for  3D&lt;\/p&gt;\n\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?fit=300%2C226&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts1.jpg?fit=450%2C339&amp;ssl=1\" class=\" wp-image-8779 \" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([500,500],'load wp-content\/uploads\/2012\/12\/RuO4+ethanol-singlet-ts-550.168113.log;frame 27;connect (atomno=3) (atomno=12) PARTIAL;connect (atomno=7) (atomno=2) PARTIAL;connect (atomno=7) (atomno=1) PARTIAL;vectors on;vectors 4;vectors scale 5.0; color vectors magenta; vibration 20;animation mode loop;');\" alt=\"TS1. Click for 3D\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts2.jpg?w=200\"  \/><p id=\"caption-attachment-8779\" class=\"wp-caption-text\">TS2 as a singlet. Click for 3D<\/p><\/div>\n<\/td>\n<td>&#8211;<img data-recalc-dims=\"1\" decoding=\"async\" data-attachment-id=\"8794\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8794\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS2.gif?fit=400%2C339&amp;ssl=1\" data-orig-size=\"400,339\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"tpap-TS2\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS2.gif?fit=300%2C254&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS2.gif?fit=400%2C339&amp;ssl=1\" class=\"aligncenter size-full wp-image-8794\" alt=\"tpap-TS2\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap-TS2.gif?w=210\"  \/><\/td>\n<\/tr>\n<tr>\n<td>\n<div id=\"attachment_8811\" style=\"width: 220px\" class=\"wp-caption aligncenter\"><img data-recalc-dims=\"1\" decoding=\"async\" aria-describedby=\"caption-attachment-8811\" data-attachment-id=\"8811\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8811\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/TS2-triplet.jpg?fit=241%2C176&amp;ssl=1\" data-orig-size=\"241,176\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"TS2-triplet\" data-image-description=\"\" data-image-caption=\"&lt;p&gt;TS2 as a triplet. Click for  3D&lt;\/p&gt;\n\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/TS2-triplet.jpg?fit=241%2C176&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/TS2-triplet.jpg?fit=241%2C176&amp;ssl=1\" class=\"size-full wp-image-8811\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([500,500],'load wp-content\/uploads\/2012\/12\/RuO4+ethanol-triplet-ts-550.182192.log;frame 11;connect (atomno=3) (atomno=12) PARTIAL;connect (atomno=7) (atomno=2) PARTIAL;connect (atomno=7) (atomno=1) PARTIAL;vectors on;vectors 4;vectors scale 5.0; color vectors magenta; vibration 20;animation mode loop;');\" alt=\"TS2 as a triplet. Click for 3D\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/TS2-triplet.jpg?w=210\"  \/><p id=\"caption-attachment-8811\" class=\"wp-caption-text\">TS2 as a triplet. Click for 3D<\/p><\/div>\n<\/td>\n<td><img data-recalc-dims=\"1\" decoding=\"async\" data-attachment-id=\"8813\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8813\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/RuO4-ts2-triplet.gif?fit=386%2C341&amp;ssl=1\" data-orig-size=\"386,341\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"RuO4-ts2-triplet\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/RuO4-ts2-triplet.gif?fit=300%2C265&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/RuO4-ts2-triplet.gif?fit=386%2C341&amp;ssl=1\" class=\"aligncenter size-full wp-image-8813\" alt=\"RuO4-ts2-triplet\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/RuO4-ts2-triplet.gif?w=210\"  \/><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>Right away, we have a problem;\u00a0\u0394G<sub>298<\/sub><sup>\u2021\u00a0<\/sup>37.1 kcal\/mol is too high to be a realistic pathway, and yet\u00a0RuO<sub>4<\/sub> is a known oxidant<span id=\"cite_ITEM-15812-1\" name=\"citation\"><a href=\"#ITEM-15812-1\">[2]<\/a><\/span>. One way out is to see if the triplet state energy of this system might be lower. Whilst the triplet-state reactant is higher in energy (by 27.5 kcal\/mol) , <a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.105596\" target=\"_blank\">TS2 <\/a>\u00a0is lower and corresponds to a reduced barrier of \u0394G<sub>298<\/sub><sup>\u2021<\/sup>\u00a028.2 kcal\/mol. Better, but a (small?) question mark still remains, since one would really expect the barrier to be ~20 kcal\/mol or less for a &#8220;voracious oxidant&#8221;. Perhaps the incursion of triplets makes it indiscriminate? The spin density at the transition state is shown below, it extends across both oxygen, carbon and Ru.<\/p>\n<p style=\"text-align: center;\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" data-attachment-id=\"8817\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8817\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/ts2-triplet-spin.jpg?fit=345%2C217&amp;ssl=1\" data-orig-size=\"345,217\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"ts2-triplet-spin\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/ts2-triplet-spin.jpg?fit=300%2C188&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/ts2-triplet-spin.jpg?fit=345%2C217&amp;ssl=1\" class=\"aligncenter wp-image-8817\" alt=\"ts2-triplet-spin\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/ts2-triplet-spin.jpg?resize=207%2C130\" width=\"207\" height=\"130\" srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/ts2-triplet-spin.jpg?w=345&amp;ssl=1 345w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/ts2-triplet-spin.jpg?resize=300%2C188&amp;ssl=1 300w\" sizes=\"auto, (max-width: 207px) 100vw, 207px\" \/><\/p>\n<p>The <em><strong>tpap<\/strong><\/em> modification to this process is to use Ru(VII) in the form of a radical anion partnered with a quaternary ammonium cation. The basic reagent is therefore an <a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.105613\" target=\"_blank\">ion-pair<\/a>, hence the solvation approach mentioned earlier is needed to describe the energetics of such a species. The R alkyl groups here are modelled as methyl rather than propyl.<\/p>\n<p><img decoding=\"async\" data-attachment-id=\"8799\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8799\" data-orig-file=\"https:\/\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap1.svg\" data-orig-size=\"\" data-comments-opened=\"1\" data-image-meta=\"[]\" data-image-title=\"tpap1\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap1.svg\" data-large-file=\"https:\/\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap1.svg\" class=\"aligncenter size-full wp-image-8799\" alt=\"tpap1\" src=\"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap1.svg\" \/><\/p>\n<p><a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.105496\" target=\"_blank\">TS2<\/a> for this radical-ion-pair is shown below, and it has\u00a0\u0394G<sub>298<\/sub><sup>\u2021<\/sup>\u00a030.8 kcal\/mol, 2.6 kcal\/mol higher than for the un-moderated reagent. In this case, the higher-spin <a href=\"http:\/\/hdl.handle.net\/10.6084\/m9.figshare.105600\" target=\"_blank\">quartet states<\/a> are higher \u00a0in energy (by at least ~7.9 kcal\/mol) and so do not participate.\u00a0<\/p>\n<table class=\"aligncenter\" border=\"0\" align=\"center\">\n<tbody>\n<tr>\n<td><img data-recalc-dims=\"1\" decoding=\"async\" data-attachment-id=\"8821\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8821\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts21.jpg?fit=488%2C232&amp;ssl=1\" data-orig-size=\"488,232\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"tpap-ts2\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts21.jpg?fit=300%2C142&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts21.jpg?fit=450%2C214&amp;ssl=1\" class=\"aligncenter size-full wp-image-8821\" onclick=\"jmolInitialize('..\/Jmol\/');jmolSetAppletColor('white');jmolApplet([500,500],'load wp-content\/uploads\/2012\/12\/tpap-doublet-ts-764.279774.log;frame 31;connect (atomno=3) (atomno=12) PARTIAL;connect (atomno=7) (atomno=2) PARTIAL;connect (atomno=7) (atomno=1) PARTIAL;vectors on;vectors 4;vectors scale 5.0; color vectors magenta; vibration 20;animation mode loop;');\" alt=\"tpap-ts2\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts21.jpg?w=410\"  srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts21.jpg?w=488&amp;ssl=1 488w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts21.jpg?resize=300%2C142&amp;ssl=1 300w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>The spin density for tpap-TS2 also reveals it to be concentrated on Ru and one oxygen. Little is transferred to the ethanol, and we might infer then that this TS corresponds to transfer of two-electrons from the ethanol to the Ru-oxidant. This corresponds to Ru(VII) being reduced to Ru(V), <em>i.e.<\/em> a 2-electron oxidation\/reduction. Unfortunately, an attempt to chart the reaction across a whole reaction coordinate (IRC) failed with SCF-convergence problems, which might suggest a change in the spin-configuration during this process. A more sophisticated multi-configurational approach might be needed to properly establish the electron dynamics of what is turning out to be a more complex reaction than first seemed.<\/p>\n<p style=\"text-align: center;\"><img data-recalc-dims=\"1\" decoding=\"async\" data-attachment-id=\"8823\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=8823\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts2-spin-density.jpg?fit=558%2C293&amp;ssl=1\" data-orig-size=\"558,293\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"tpap-ts2-spin-density\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts2-spin-density.jpg?fit=300%2C157&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts2-spin-density.jpg?fit=450%2C236&amp;ssl=1\" class=\"aligncenter wp-image-8823\" alt=\"tpap-ts2-spin-density\" src=\"https:\/\/i0.wp.com\/www.ch.imperial.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts2-spin-density.jpg?w=410\"  srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts2-spin-density.jpg?w=558&amp;ssl=1 558w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2012\/12\/tpap-ts2-spin-density.jpg?resize=300%2C157&amp;ssl=1 300w\" sizes=\"(max-width: 450px) 100vw, 450px\" \/><\/p>\n<p>It is time to sum up what might have been learnt.<\/p>\n<ol>\n<li>A reality check on the energetics of a viable-looking mechanistic route can establish whether such a mechanism does have a low enough free-energy to be viable at (in this case) room temperatures.<\/li>\n<li>In fact, observing that our initial mechanism had too high an energy led us to discover a triplet-state path that was significantly lower in energy.\u00a0However, even this is still a bit too high.<\/li>\n<li>The <em><strong>tpap-variation<\/strong><\/em> of the oxidant, which enforces a doublet-state upon the mechanism,has a barrier which appears to be similar to the triplet-state\u00a0RuO<sub>4<\/sub> mechanism. This too may be too high in energy. At least we can probably rule out a quartet-state mechanism.<\/li>\n<li>And so it seems appropriate to end here by noting that experimentally<span id=\"cite_ITEM-15812-2\" name=\"citation\"><a href=\"#ITEM-15812-2\">[3]<\/a><\/span> the kinetics of tpap oxidations appear to be autocatalytic. The rate speeds up once some RuO<sub>3<\/sub> (or RuO<sub>2<\/sub>) has been formed, and this suggests that perhaps a binuclear system containing two Ru atoms is a faster oxidant than the mononuclear variety. This reminds of the mechanism for Sharpless perepoxidation, where two metal centres were needed to control the stereochemistry.<\/li>\n<\/ol>\n<p>So after all of this, we have not really found an explanation of why tpap is a more selective and moderate oxidant than the rapacious RuO<sub>4<\/sub>. But perhaps this is because more complex models with more than one Ru-atom need to be constructed. This would in turn allow the oxidative hydride abstraction from the alcohol to occur in a larger (7) ring transition state, which is always the preferred geometry for such transfers. If I find such, I will report back here.<\/p>\n<h2>References<\/h2>\n    <ol class=\"kcite-bibliography csl-bib-body\"><li id=\"ITEM-15812-0\">S.V. Ley, J. Norman, W.P. Griffith, and S.P. Marsden, \"Tetrapropylammonium Perruthenate, Pr&lt;sub&gt;4&lt;\/sub&gt;N&lt;sup&gt;+&lt;\/sup&gt;RuO&lt;sub&gt;4&lt;\/sub&gt;\n                  &lt;sup&gt;-&lt;\/sup&gt;, TPAP: A Catalytic Oxidant for Organic Synthesis\", <i>Synthesis<\/i>, vol. 1994, pp. 639-666, 1994. <a href=\"https:\/\/doi.org\/10.1055\/s-1994-25538\">https:\/\/doi.org\/10.1055\/s-1994-25538<\/a>\n\n<\/li>\n<li id=\"ITEM-15812-1\">D.G. Lee, U.A. Spitzer, J. Cleland, and M.E. Olson, \"The oxidation of cyclobutanol by ruthenium tetroxide and sodium ruthenate\", <i>Canadian Journal of Chemistry<\/i>, vol. 54, pp. 2124-2126, 1976. <a href=\"https:\/\/doi.org\/10.1139\/v76-304\">https:\/\/doi.org\/10.1139\/v76-304<\/a>\n\n<\/li>\n<li id=\"ITEM-15812-2\">D.G. Lee, Z. Wang, and W.D. Chandler, \"Autocatalysis during the reduction of tetra-n-propylammonium perruthenate by 2-propanol\", <i>The Journal of Organic Chemistry<\/i>, vol. 57, pp. 3276-3277, 1992. <a href=\"https:\/\/doi.org\/10.1021\/jo00038a009\">https:\/\/doi.org\/10.1021\/jo00038a009<\/a>\n\n<\/li>\n<li id=\"ITEM-15812-3\">J. Kong, P.V.R. Schleyer, and H.S. Rzepa, \"Successful Computational Modeling of Isobornyl Chloride Ion-Pair Mechanisms\", <i>The Journal of Organic Chemistry<\/i>, vol. 75, pp. 5164-5169, 2010. <a href=\"https:\/\/doi.org\/10.1021\/jo100920e\">https:\/\/doi.org\/10.1021\/jo100920e<\/a>\n\n<\/li>\n<\/ol>\n\n<\/div> <!-- kcite-section 15812 -->","protected":false},"excerpt":{"rendered":"<p>tpap, as it is affectionately known, is a ruthenium-based oxidant of primary alcohols to aldehydes discovered by Griffith and Ley. Whereas ruthenium tetroxide (RuO4) is a voracious oxidant, its radical anion countered by a tetra-propylammonium cation is considered a more moderate animal. In this post, I want to try to use quantum mechanically derived energies [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[6],"tags":[1139,147,164,972,246,980,1530,981,990,1527],"class_list":["post-15812","post","type-post","status-publish","format-standard","hentry","category-interesting-chemistry","tag-catalysis","tag-energy","tag-free-energy","tag-low-energy-elimination","tag-metal","tag-react-freq","tag-reaction-mechanism","tag-ruo4-ethanol","tag-triplet-state-energy","tag-tutorial-material"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p1gPyz-472","jetpack_likes_enabled":true,"_links":{"self":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/15812","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=15812"}],"version-history":[{"count":0,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/15812\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=15812"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=15812"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=15812"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}