{"id":3003,"date":"2010-12-11T23:11:54","date_gmt":"2010-12-11T22:11:54","guid":{"rendered":"http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3003"},"modified":"2010-12-11T23:11:54","modified_gmt":"2010-12-11T22:11:54","slug":"janus-mechanisms-the-past-and-the-future-reactions-of-the-diazonium-cation","status":"publish","type":"post","link":"https:\/\/www.rzepa.net\/blog\/?p=3003","title":{"rendered":"Janus mechanisms (the past and the future): Reactions of the diazonium cation."},"content":{"rendered":"<div class=\"kcite-section\" kcite-section-id=\"3003\">\n<p>Janus was the <a href=\"http:\/\/en.wikipedia.org\/wiki\/Janus\" target=\"_blank\">mythological Roman god<\/a> depicted as having two heads facing opposite directions, looking simultaneously into the past and the future. Some of the most ancient (<em>i.e. <\/em>19th century) known reactions can be considered part of a <a href=\"http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=2423\" target=\"_blank\">chemical mythology; <\/a>perhaps it is time for\u00a0a Janus-like look into their future.<\/p>\n<div id=\"attachment_3007\" style=\"width: 259px\" class=\"wp-caption aligncenter\"><a href=\"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-3007\" data-attachment-id=\"3007\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=3007\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?fit=1244%2C1059&amp;ssl=1\" data-orig-size=\"1244,1059\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"diazonium\" data-image-description=\"\" data-image-caption=\"&lt;p&gt;Reaction of the diazonium cation with cyanide.&lt;\/p&gt;\n\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?fit=300%2C255&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?fit=450%2C383&amp;ssl=1\" class=\"size-full wp-image-3007\" title=\"diazonium\" src=\"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?resize=249%2C212\" alt=\"\" width=\"249\" height=\"212\" srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?w=1244&amp;ssl=1 1244w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?resize=300%2C255&amp;ssl=1 300w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?resize=1024%2C871&amp;ssl=1 1024w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazonium.jpg?w=900&amp;ssl=1 900w\" sizes=\"auto, (max-width: 249px) 100vw, 249px\" \/><\/a><p id=\"caption-attachment-3007\" class=\"wp-caption-text\">Reaction of the diazonium cation with cyanide.<\/p><\/div>\n<p>The phenyl diazonium ion is often introduced early in most chemistry teaching; it is used to produce spectacularly coloured solutions from colourless starting materials and makes an immediate impression.<sup>1<\/sup> The reaction of this species with cyanide salts often appears in introductory courses of aromatic chemistry as a means of producing aryl cyanides. It entered the text books around a century ago as the\u00a0<a href=\"http:\/\/en.wikipedia.org\/wiki\/Sandmeyer_reaction\" target=\"_blank\">Sandmeyer reaction<\/a> (using copper(I)cyanide, but it is also reported as occurring using more ionic cyanide salts as well).<sup>2<\/sup> The mechanism of the ionic reaction however has been given little attention recently. One common representation is as a unimolecular reaction to lose nitrogen gas forming an arene cation, which is mechanistically then followed by fast quenching with cyanide anion to replace the diazo group with the cyano group.<\/p>\n<p>Computational modelling of such ion-pair reactions has now become possible,<sup>3<\/sup> and is going to be used here to peek into the future. A B3LYP\/6-311G(d,p)\/SCRF calculation shows a transition state involving C-N cleavage, with an adjacent cyanide ion doing rather more than merely spectating. The dipole moment of the transition state is 11D (in acetonitrile as solvent). The structure shows the ion-pair endeavouring to minimise the charge separation, with the cyanide approaching at a rather different angle from the departing diazo group. This sort of S<sub>N<\/sub>2 displacement at an sp<sup>2<\/sup> (as opposed to sp<sup>3<\/sup>) carbon centre is mechanistically quite unusual.<sup>4<\/sup> The free energy of activation for this mechanism <a href=\"http:\/\/hdl.handle.net\/10042\/to-6162\" target=\"_blank\">is calculated<\/a> as 24.9 kcal\/mol, which is slightly worryingly high for what is considered a room-temperature reaction (the same method gave quite reasonable barriers for another ion-pair mechanism<sup>3<\/sup>).<\/p>\n<div id=\"attachment_3015\" style=\"width: 269px\" class=\"wp-caption aligncenter\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-3015\" data-attachment-id=\"3015\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=3015\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazasn2.jpg?fit=518%2C426&amp;ssl=1\" data-orig-size=\"518,426\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"diazasn2\" data-image-description=\"\" data-image-caption=\"&lt;p&gt;Phenyldiazonium cation  + cyanide anion; substitution mechanism. Click for  3D&lt;\/p&gt;\n\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazasn2.jpg?fit=300%2C246&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazasn2.jpg?fit=450%2C370&amp;ssl=1\" class=\"size-full wp-image-3015\" title=\"diazasn2\" onclick=\"jmolInitialize('..\/Jmol\/',true);jmolSetAppletColor('green');jmolApplet([600,600],'load wp-content\/uploads\/2010\/12\/diazonium-sn2.log;frame 39;set measurementUnits Angstroms;delay 5;vectors on;vectors 4;vectors scale 5.0; color vectors purple; vibration 15;animation mode loop;measure 4 14;measure 4 12;connect (atomno=14) (atomno=4) PARTIAL;connect (atomno=12) (atomno=4) PARTIAL;');\" src=\"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/12\/diazasn2.jpg?resize=259%2C213\" alt=\"\" width=\"259\" height=\"213\" srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazasn2.jpg?w=518&amp;ssl=1 518w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazasn2.jpg?resize=300%2C246&amp;ssl=1 300w\" sizes=\"auto, (max-width: 259px) 100vw, 259px\" \/><p id=\"caption-attachment-3015\" class=\"wp-caption-text\">Phenyldiazonium cation + cyanide anion; substitution mechanism. Click for 3D<\/p><\/div>\n<p>So time to see if all is what it might seem. There are many other mechanisms that might be explored; below is what seems quite a reasonable one, the elimination of the diazo-group with accompanying proton abstraction to <a href=\"http:\/\/hdl.handle.net\/10042\/to-6153\" target=\"_blank\">form a benzyne<\/a>. This transition state has an activation free energy of 17.8 kcal\/mol, a much more reasonable value for a room temperature reaction. The dipole moment is 17.1D (the reactant ion-pair is 19.7D).<\/p>\n<div id=\"attachment_3025\" style=\"width: 286px\" class=\"wp-caption aligncenter\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-3025\" data-attachment-id=\"3025\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=3025\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne.jpg?fit=551%2C411&amp;ssl=1\" data-orig-size=\"551,411\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"diazabenzyne\" data-image-description=\"\" data-image-caption=\"&lt;p&gt;Benzyne mechanism. Click for  3D&lt;\/p&gt;\n\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne.jpg?fit=300%2C223&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne.jpg?fit=450%2C336&amp;ssl=1\" class=\"size-full wp-image-3025\" title=\"diazabenzyne\" onclick=\"jmolInitialize('..\/Jmol\/',true);jmolSetAppletColor('yellow');jmolApplet([600,600],'load wp-content\/uploads\/2010\/12\/diazonium-benzyne.log;frame 19;set measurementUnits Angstroms;delay 5;vectors on;vectors 4;vectors scale 5.0; color vectors purple; vibration 15;animation mode loop;measure 14 7;measure 6 12;measure 1 7;connect (atomno=12) (atomno=6) PARTIAL;connect (atomno=1) (atomno=7) PARTIAL;connect (atomno=14) (atomno=7) PARTIAL;');\" src=\"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne.jpg?resize=276%2C206\" alt=\"\" width=\"276\" height=\"206\" srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne.jpg?w=551&amp;ssl=1 551w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne.jpg?resize=300%2C223&amp;ssl=1 300w\" sizes=\"auto, (max-width: 276px) 100vw, 276px\" \/><p id=\"caption-attachment-3025\" class=\"wp-caption-text\">Benzyne mechanism, in acetonitrile solvent. Click for 3D<\/p><\/div>\n<p>So could it be that this veritable reaction actually proceeds <em>via<\/em> a different mechanism from that in the text books? Benzyne would be formed as a very reactive intermediate, and presumably in the presence of cyanide anions, it would react by nucleophilic addition to form benzonitrile, the same product as before. How could this be verified? Well, if the carbon atom carrying the diazonium group were to be labelled as say <sup>14<\/sup>C, the original mechanism would carry all that label at one carbon in the benzonitrile product. But the benzyne mechanism would scramble the label between two carbons. Janus therefore sees the future in the shape of a useful experiment which could be done to distinguish the two alternative mechanisms.<\/p>\n<p>It is also noteworthy that the two alternative transition states have different dipole moments, and so are affected differently by solvent polarity. Thus in water, the activation free energies are respectively (substitution\/elimination) 25.1 and 17.9, whilst in benzene as solvent they are much higher: 48.7 and 39.0 kcal\/mol. The effect of the solvent upon the structure of the transition state is also considerable. Below is shown the benzyne elimination mechanism as calculated in the non polar benzene as solvent. Note how the proton transfer is much more advanced, and the C&#8230;N cleavage is less advanced than in acetonitrile as solvent.<\/p>\n<div id=\"attachment_3040\" style=\"width: 283px\" class=\"wp-caption aligncenter\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" aria-describedby=\"caption-attachment-3040\" data-attachment-id=\"3040\" data-permalink=\"https:\/\/www.rzepa.net\/blog\/?attachment_id=3040\" data-orig-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne-benzene.jpg?fit=545%2C364&amp;ssl=1\" data-orig-size=\"545,364\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}\" data-image-title=\"diazabenzyne-benzene\" data-image-description=\"\" data-image-caption=\"&lt;p&gt;Benzyne transition state, in benzene solvent. Click for 3D&lt;\/p&gt;\n\" data-medium-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne-benzene.jpg?fit=300%2C200&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne-benzene.jpg?fit=450%2C301&amp;ssl=1\" class=\"size-full wp-image-3040\" title=\"diazabenzyne-benzene\" onclick=\"jmolInitialize('..\/Jmol\/',true);jmolSetAppletColor('orange');jmolApplet([600,600],'load wp-content\/uploads\/2010\/12\/diazobenzyne-benzene.log;frame 41;set measurementUnits Angstroms;delay 5;vectors on;vectors 4;vectors scale 5.0; color vectors purple; vibration 15;animation mode loop;measure 14 7;measure 6 12;measure 1 7;connect (atomno=12) (atomno=6) PARTIAL;connect (atomno=1) (atomno=7) PARTIAL;connect (atomno=14) (atomno=7) PARTIAL;');\" src=\"https:\/\/i0.wp.com\/www.ch.ic.ac.uk\/rzepa\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne-benzene.jpg?resize=273%2C182\" alt=\"\" width=\"273\" height=\"182\" srcset=\"https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne-benzene.jpg?w=545&amp;ssl=1 545w, https:\/\/i0.wp.com\/www.rzepa.net\/blog\/wp-content\/uploads\/2010\/12\/diazabenzyne-benzene.jpg?resize=300%2C200&amp;ssl=1 300w\" sizes=\"auto, (max-width: 273px) 100vw, 273px\" \/><p id=\"caption-attachment-3040\" class=\"wp-caption-text\">Benzyne transition state, in benzene solvent. Click for 3D<\/p><\/div>\n<p>We are seeing something of a revolution here. Gradually, the mechanisms of the reaction library built up over the last 100 years or so are increasingly being explored using quantitative calculations. It seems entirely likely that more surprises will crop up.<\/p>\n<hr \/>\n<ol>\n<li> At the age of ~12 I was introduced to chemistry <em>via<\/em> this reaction, an exposure at least in part why almost 50 years later I am still doing chemistry and why I write this blog.<\/li>\n<li> Kazitsyna, L. A.; Gruzdneva, V. N. V<em>estnik Moskovskogo Universiteta, Seriya 2: Khimiya<\/em>, <strong>1975<\/strong>, <em>16<\/em>, 331-7.<\/li>\n<li> The ion-pair mechanism of the racemisation of iso-bornyl chloride, another ancient and almost mythological reaction, has recently been studied in this manner; J. Kong, P. v. R. Schleyer and H. S. Rzepa, &#8220;Successful Computational Modeling of Iso-bornyl Chloride Ion-Pair Mechanisms&#8221;, <em>J. Org. Chem.<\/em>, <strong>2010<\/strong>, DOI: <a href=\"http:\/\/dx.doi.org\/10.1021\/jo100920e\" target=\"references\">10.1021\/jo100920e<\/a><\/li>\n<li>Z. Wu and R. Glaser, &#8220;Ab Initio Study of the SN<sub>1<\/sub>Ar and SN<sub>2<\/sub>Ar Reactions of Benzenediazonium Ion with Water. On the Conception of \u201cUnimolecular Dediazoniation\u201d in Solvolysis Reactions&#8221;, \u00a0<em>J. Am. Chem. Soc<\/em>., <strong>2004<\/strong>, DOI:\u00a0<a href=\"http:\/\/dx.doi.org\/10.1021\/ja047620a\" target=\"_blank\">10.1021\/ja047620a<\/a><\/li>\n<p><strong> <\/strong><\/ol>\n<p><strong> <\/strong><\/p>\n<p><strong><br \/>\n<\/strong><\/p>\n<p><strong><br \/>\n<\/strong><\/p>\n<p><strong> <\/strong><\/p>\n<hr \/>\n<p><span style=\"font-weight: normal;\">Archived as Henry Rzepa, Janus mechanisms (the past and the future): Reactions of the diazonium cation,\u00a0URL:http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=3003. Accessed: 2010-12-12. <\/span><a href=\"http:\/\/www.webcitation.org\/5uv90cJnU\"><span style=\"font-weight: normal;\">(Archived by WebCite<\/span><sup><span style=\"font-weight: normal;\">\u00ae<\/span><\/sup><span style=\"font-weight: normal;\"> at http:\/\/www.webcitation.org\/5uv90cJnU)<\/span><\/a><\/p>\n<!-- kcite active, but no citations found -->\n<\/div> <!-- kcite-section 3003 -->","protected":false},"excerpt":{"rendered":"<p>Janus was the mythological Roman god depicted as having two heads facing opposite directions, looking simultaneously into the past and the future. Some of the most ancient (i.e. 19th century) known reactions can be considered part of a chemical mythology; perhaps it is time for\u00a0a Janus-like look into their future. The phenyl diazonium ion is [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[6],"tags":[18,50,84,102,114,128,129,164,181,1528,201,223,266],"class_list":["post-3003","post","type-post","status-publish","format-standard","hentry","category-interesting-chemistry","tag-activation-free-energy","tag-benzonitrile-product","tag-chemical-mythology","tag-coloured-solutions","tag-cyano","tag-diazo","tag-diazonium","tag-free-energy","tag-henry-rzepa","tag-historical","tag-ion-pair-mechanisms","tag-l-a","tag-nitrogen-gas"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p1gPyz-Mr","jetpack_likes_enabled":true,"_links":{"self":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/3003","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=3003"}],"version-history":[{"count":0,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/3003\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=3003"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=3003"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=3003"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}