{"id":4439,"date":"2011-06-15T13:55:38","date_gmt":"2011-06-15T13:55:38","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=4439"},"modified":"2011-06-15T13:55:38","modified_gmt":"2011-06-15T13:55:38","slug":"molecular-illusions-and-deceptions-ascending-and-descending-penrose-stairs","status":"publish","type":"post","link":"https:\/\/www.rzepa.net\/blog\/?p=4439","title":{"rendered":"Molecular illusions and deceptions. Ascending and Descending Penrose stairs."},"content":{"rendered":"
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It is not often that an article on the topic of illusion and deception makes it into a chemical journal. Such is addressed (DOI:\u00a010.1002\/anie.201102210<\/a>) in no less an eminent journal than Angew Chemie<\/em>. The illusion (or deception if you will) actually goes to the heart of how we represent three-dimensional molecules in two dimensions, and the meanings that may be subverted by doing so. A it happens, it is also a recurring theme of this particular blog, which is the need to present chemistry with data for all three dimensions fully intact (hence the Click for 3D <\/em>captions which often appear profusely here).<\/p>\n

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Molecular Penrose stair. Click for 3D.<\/p><\/div>The molecule above has been synthesized and a crystal structure obtained (if you click above, you will get the 3D coordinates; the above is pruned of some sidechains which are irrelevant here). The authors assert it as an example of a Penrose stair<\/strong>, or perhaps the better known lithograph by M. C. Escher known as Ascending and Descending<\/a><\/strong>. This is a visual paradox, the point of which is to show how the eye can be easily deceived if the brain is asked to fill in a third dimension given only two. The molecule above has been drawn with the illusion of depth, using (or mis-using) the embolded bonds akin to those proposed by Maehr<\/a> (who meant something quite different as it happens).\u00a0It should be worrying to any chemist who cares about stereochemistry to think that use of these time honoured conventions could actually result in a paradox! So perhaps this accounts for why an article on this very topic has made it onto the pages of such an eminent journal.<\/p>\n

What might be of (chemical) interest about this molecule, other than its illusory aspects? Well, could you for example work out, given ONLY the representation above, that the molecule has D2<\/sub> symmetry, and is therefore chiral? I wondered if it might also be M\u00f6bius (with perhaps two half twists), although in fact the \u03c0-system in this case has a linking number Lk of zero (not 2). It also has some interesting rather close H…H contacts in the middle, and the inner periphery appears to be a 14-annulene and the outer 26, both conforming to the Huckel 4n+2 rule. Despite this the central C-C bond is actually quite long, and the conjugation is hence significantly interrupted. There is more chemistry in the original article.<\/p>\n

But I want to close here on the point that to overcome the deception and illusion, you need to get the three dimensional data in chemistry. You can do this by clicking above. Or, by going to the original article and striving to do so there. I think you will find the latter route the greater challenge! Then, ask yourself why an eminent journal, in publishing an article on the topic of deception and illusion, makes it so relatively difficult to overcome that illusion. Certainly more difficult than I hope it proves to be on this blog!<\/p>\n\n<\/div> ","protected":false},"excerpt":{"rendered":"

It is not often that an article on the topic of illusion and deception makes it into a chemical journal. Such is addressed (DOI:\u00a010.1002\/anie.201102210) in no less an eminent journal than Angew Chemie. The illusion (or deception if you will) actually goes to the heart of how we represent three-dimensional molecules in two dimensions, and […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[3,6],"tags":[70,568,94,591,1527],"class_list":["post-4439","post","type-post","status-publish","format-standard","hentry","category-chemical-it","category-interesting-chemistry","tag-chemical","tag-chemical-journal","tag-chemist","tag-m-c-escher","tag-tutorial-material"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p1gPyz-19B","jetpack_likes_enabled":true,"_links":{"self":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/4439","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=4439"}],"version-history":[{"count":0,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/4439\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=4439"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=4439"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=4439"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}