{"id":878,"date":"2009-10-02T11:08:14","date_gmt":"2009-10-02T10:08:14","guid":{"rendered":"http:\/\/www.ch.ic.ac.uk\/rzepa\/blog\/?p=878"},"modified":"2009-10-02T11:08:14","modified_gmt":"2009-10-02T10:08:14","slug":"its-hexa-coordinate-carbon-spock-but-not-as-we-know-it","status":"publish","type":"post","link":"https:\/\/www.rzepa.net\/blog\/?p=878","title":{"rendered":"It’s Hexa-coordinate carbon Spock – but not as we know it!"},"content":{"rendered":"
\n

Science is about making connections. And these can often be made between the most unlikely concepts. Thus in the posts I have made about pentavalent carbon<\/strong>, one can identify a series of conceptual connections. The\u00a0first, by \u00a0Matthias\u00a0Bickelhaupt and co, resulted in the suggestion of a possible frozen\u00a0SN<\/sub>2 transition state<\/strong>. They used astatine, and\u00a0this enabled a connection to be made between another good nucleophile\/nucleofuge,\u00a0cyclopentadienyl anion. This too seems to lead to a frozen\u00a0Sn2 transition state. \u00a0The cyclopentadienyl theme then asks whether this anion can coordinate a much simpler unit, a C2+<\/sup> dication (rather than Bickelhaupt’s suggestion of a (NC)3<\/sub>C+<\/sup> cation\/radical) and indeed that complex is also frozen, again with 5-coordinate carbon, and this time with five equal C-C bonds. So here, the perhaps inevitable progression of ideas moves on to examining the properties of this complex, the outcome being a quite counter-intuitive suggestion which moves us into new territory.<\/p>\n

The journey starts with the previous observation that the HOMO of the carbyliumylidene cation, shown in the previous post, has prominent electron density along the five-fold symmetry axis of the molecule;<\/p>\n

\"The

The HOMO orbital. Click for 3D<\/p><\/div>\n

This suggests that the apical 5-coordinate carbon might actually be basic<\/strong>, and hence coordinate a proton to form a di-cation (below). So adding a proton results in the following stable (in the sense of having all positive force constants) structure, with apical C-C bond lengths of 1.7\u00c5 (compared to 1.8\u00c5 for the unprotonated system) and the bouncing castle\/trampoline mode of \u00a0875 cm-1<\/sup> (DOI: 10042\/to-2435<\/a>) is likewise increased (for the pentamethyl derivative of the structure shown below). The apical C-H stretch has the highest value of all the CHs in the molecule, 3208 cm-1<\/sup>. The calculated proton affinity of the parent compound is 134.2 kcal\/mol. To put this into context, we can compare this value with a range of first and second proton affinities reported for carbon bases by\u00a0Frenking (DOI: 10.1002\/cphc.200800208<\/a>).\u00a0The highest second proton affinity there reported (ie protonation of an already positive system) is around\u00a0106 kcal\/mol, which is a good deal less than that found here! So we might conclude that our value \u00a0must be a candidate for highest second proton affinity ever proposed for a carbon base.<\/p>\n

\"Hexa-coordinate

Hexa-coordinate Carbon?<\/p><\/div>\n

The value of \u03c1(r) for the AIM bond critical point located for each of the five apical C-C bonds is 0.156 au, again up from the value for the unprotonated species. As before, the Cp ring itself shows no ring critical point. An ELF analysis (below) shows five disynaptic basins in the \u00a0C-C bond region, with the basin integrating to \u00a00.75 electrons each. Together with the electrons in the\u00a0apical C-H bond,\u00a06.09 electrons are associated with basins surrounding this carbon atom. Both the\u00a0AIM and the\u00a0ELF concur in describing this carbon as not only hexa-coordinated, but hexavalent (although the bonds are not the conventional two-electron type, but perhaps more akin to a six-centre-four-electron interaction).<\/p>\n

\"ELF

ELF Basins. Click for 3D<\/p><\/div>\n

So I suggest that simple protonation of a highly basic cation has resulted in a six-coordinate carbon atom, which exhibits six strong bonds coordinated around it. I suppose it is inevitable again that one ends this post with the question whether this species too might one day be made.<\/p>\n\n<\/div> ","protected":false},"excerpt":{"rendered":"

Science is about making connections. And these can often be made between the most unlikely concepts. Thus in the posts I have made about pentavalent carbon, one can identify a series of conceptual connections. The\u00a0first, by \u00a0Matthias\u00a0Bickelhaupt and co, resulted in the suggestion of a possible frozen\u00a0SN2 transition state. They used astatine, and\u00a0this enabled a […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[5,6],"tags":[97,1525,1526,240],"class_list":["post-878","post","type-post","status-publish","format-standard","hentry","category-hypervalency","category-interesting-chemistry","tag-chs","tag-hypervalency","tag-interesting-chemistry","tag-matthias-bickelhaupt"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p1gPyz-ea","jetpack_likes_enabled":true,"_links":{"self":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/878","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=878"}],"version-history":[{"count":0,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/878\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=878"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=878"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=878"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}