{"id":8898,"date":"2013-01-04T11:01:12","date_gmt":"2013-01-04T11:01:12","guid":{"rendered":"http:\/\/www.ch.imperial.ac.uk\/rzepa\/blog\/?p=8898"},"modified":"2013-01-04T11:01:12","modified_gmt":"2013-01-04T11:01:12","slug":"the-gauche-effect-seeking-evidence-by-a-survey-of-crystal-structures","status":"publish","type":"post","link":"https:\/\/www.rzepa.net\/blog\/?p=8898","title":{"rendered":"The gauche effect: seeking evidence by a survey of crystal structures."},"content":{"rendered":"
\n

I previously blogged about anomeric effects involving\u00a0\u03c0 electrons as donors<\/a>, and my post on the conformation of 1,2-difluorethane<\/a>\u00a0turned out one of the most popular. Here I thought I would present the results of searching the Cambridge crystal database for examples of the gauche effect<\/strong><\/em>. The basic search is defined below\"CCDC-search\"<\/p>\n

Here, we define a four-atom torsion (TOR1), the two central carbon atoms having two groups R which can be only H or C. These two carbons are also defined as acyclic<\/em><\/strong>. The restrictions of the search as defined above also include R-factor < 0.05, not disordered and no errors. These combine to reduce the number of hits significantly (although not dissimilar distributions are obtained for less restricted searches). Each search takes only a few seconds, and one can rattle through many permutations very quickly.<\/p>\n

So here come the results. First, QA=4M=F. All but one of the examples has a torsion in the region of 60\u00b0, the classic gauche effect!<\/p>\n

\"F-C-C-F\"

F-C-C-F<\/p><\/div>\n

Next, QA=O, 4M=F. Rather more hits, and the effect is almost as clear-cut. I should point out that the apparent “exceptions” to the gauche conformation may arise from structural restrictions, and each really would have to be inspected individually for the reasons (which I do not attempt here).\u00a0<\/p>\n

\"OCCF\"

OCCF<\/p><\/div>\n

With QA=4M=O, \u00a0one has many more instances. The effect is pretty convincing (it may be that hydrogen bonding may also control the conformation).<\/p>\n

\"O-C-C-O\"

O-C-C-O<\/p><\/div>\n

Now for QA=4M=Cl. The distribution is slanted more to the anti conformation, but there are still quite a few gauche.<\/p>\n

\"Cl-CC-Cl\"

Cl-CC-Cl<\/p><\/div>\n

With QA=4M=S, the conformations are now almost all anti; the gauche effect is no more!\u00a0<\/p>\n

\"S-C-C-S\"

S-C-C-S<\/p><\/div>\n

And for QA=4M=Br, it has also almost vanished (there is only one instance for I, and that too is antiperiplanar).<\/p>\n

\"Br-C-C-Br\"

Br-C-C-Br<\/p><\/div>\n

I now return to an earlier post in which I speculated that a cyano group might participate in the anomeric effect. Well here it is in the gauche effect; QA=CN, 4M = any of N,O,F,Cl,S. Quite a few gauche orientations for this pseudo-halogen!<\/p>\n

\"Neg-C-C-CN\"

Neg-C-C-CN<\/p><\/div>\n

Another group that can act as a powerful acceptor of electrons from a donor is QA=N(Me)3<\/sub>+.<\/sup>. With 4M= N, O, F, Cl, here\u00a0\u00a0the population of gauche conformers is large. QA=CF3<\/sub> is a similar group.<\/p>\n

\"Neg-C-C-NMe3\"

Neg-C-C-NMe3<\/p><\/div>\n

 <\/p>\n

\"Neg-C-C-CF3\"

Neg-C-C-CF3<\/p><\/div>\n

 <\/p>\n

One can envisage other combinations. Thus QA= C=C, 4M = any of \u00a0N, O, F, Cl. An alkene seems one of the more powerful gauche effect participants!<\/p>\n

\"alkene-C-C-Neg\"

alkene-C-C-Neg<\/p><\/div>\n

And alkynes, perhaps slightly less so.<\/p>\n

\"Alkyne-C-C-Neg\"

Alkyne-C-C-Neg<\/p><\/div>\n

What about metals (QA = any metal, 4M = any of N, O, F, Cl, S). Well, not particularly biased either way, but clearly one in which the identity of the metal may matter.<\/p>\n

\"Metal-C-C-electronegative\"

Metal-C-C-electronegative<\/p><\/div>\n

I should end with inverting the model. If QA is electropositive (any group to the left of carbon, or below it in the periodic table) and 4M is electronegative, than they align almost exclusively anti-periplanar and not gauche. But notice how relatively few examples there are. \u00a0Synthetic chemists, please make more such molecules!<\/p>\n

\"Electropositive-C-C-Electronegative\"

Electropositive-C-C-Electronegative<\/p><\/div>\n

If you thought the gauche effect was restricted to just a few molecules, think again!<\/p>\n\n<\/div> ","protected":false},"excerpt":{"rendered":"

I previously blogged about anomeric effects involving\u00a0\u03c0 electrons as donors, and my post on the conformation of 1,2-difluorethane\u00a0turned out one of the most popular. Here I thought I would present the results of searching the Cambridge crystal database for examples of the gauche effect. The basic search is defined below Here, we define a four-atom […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[1754,6],"tags":[951,59,954,108,961,246,982,984,1527],"class_list":["post-8898","post","type-post","status-publish","format-standard","hentry","category-crystal_structure_mining","category-interesting-chemistry","tag-basic-search","tag-cambridge","tag-cf-3","tag-conformational-analysis","tag-gauche","tag-metal","tag-search-takes","tag-similar","tag-tutorial-material"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p1gPyz-2jw","jetpack_likes_enabled":true,"_links":{"self":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/8898","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=8898"}],"version-history":[{"count":0,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=\/wp\/v2\/posts\/8898\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=8898"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=8898"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.rzepa.net\/blog\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=8898"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}