Posts Tagged ‘Carbocations’

What is the (calculated) structure of a norbornyl cation anion-pair in water?

Saturday, April 1st, 2017

In a comment appended to an earlier post, I mused about the magnitude of the force constant relating to the interconversion between a classical and a non-classical structure for the norbornyl cation. Most calculations indicate the force constant for an “isolated” symmetrical cation is +ve, which means it is a true minimum and not a transition state for a [1,2] shift. The latter would have been required if the species equilibrated between two classical carbocations. I then pondered what might happen to both the magnitude and the sign of this force constant if various layers of solvation and eventually a counter-ion were to be applied to the molecule, so that a bridge of sorts between the different states of solid crystals, superacid and aqueous solutions might be built.

I augmented the model in stages. The results are summarised in the table below.

  • Firstly, adding a self-consistent-reaction-field (SCRF) continuum model for water.
  • Then adding to that four explicit water molecules symmetrically arranged around the four C-H groups mostly likely to be solvated via hydrogen bonds.
  • The final model added a chloride anion to complete the ion pair and a further three water molecules to act as its solvation sphere. A search of the Cambridge structure database for any instances of a molecule with a designated C+ and a nucleophilic halide with zero coordination number (a free halide anion) reveals no hits; such ion-pairs are clearly very unstable towards covalent bond formation, existing if at all only as transient species or when the counter-ion is non-nucleophilic such as R4B.
Calculated geometries, Def2-TZVPP/SCRF=water

Model

Apical C-C

distance,Å

Basal C-C

distance,Å

ν [1,2]

cm-1

DataDOI
Vacuum, cation
B3LYP+D3BJ
1.888 1.388 +140 10.14469/hpc/2410
Vacuum, cation
ωB97XD
1.830 1.388 +235 10.14469/hpc/2409
Vacuum, cation
B2PLYPD3
1.872 1.390 +194 10.14469/hpc/2238
SCRF, cation
ωB97XD
1.819 1.387 +236 10.14469/hpc/2413
SCRF, cation
B2PLYPD3
1.858 1.388 +202 10.14469/hpc/2243
SCRF+4H2O, cation
B2PLYPD3
1.838 1.390 +254 10.14469/hpc/2246
SCRF+7H2O+Cl ion pair
B3LYP+D3BJ
1.593, 2.485 1.510 10.14469/hpc/2408
SCRF+7H2O+Cl ion pair
ωB97XD
1.795, 1.817 1.385 +249 10.14469/hpc/2411

As the solvation and environment of the cationic model improves, the apical distance shortens significantly. But the crunch comes when a chloride counter-anion is added to desymmetrise this environment. Using the veritable B3LYP functional, but with an added dispersion term (D3BJ) and starting from a partially optimised ion-pair geometry, this geometry optimisation (shown animated below) rapidly quenches the ion-pair to form a covalent norbornyl chloride. It is noteworthy that the magnitude of the [1,2] vibration force constant (140 cm-1) is rather smaller using B3LYP than the other methods explored. 

The next method tried was ωB97XD, which contains a built-in dispersion term (D2) and also reveals a larger force constant for the gas phase [1,2] shift (≡235 cm-1). Starting from the same initial geometry as the B3LYP calculation, optimisation of the ion-pair proceeds remarkably slowly (even using the recalcfc=5 keyword to recompute the force constant matrix/search direction every five cycles to improve behaviour), suggesting that the potential energy surface is very flat indeed. The final geometry retains the ion-pair character (dipole moment 23D) but reveals distinct asymmetry in the resulting bridged structure, for which the [1,2] shift is ν 249 cm-1.

It is clear that the structure of the norbornyl ion-pair is balanced on a knife-edge. Perturbations such as change of density functional (e.g. B3LYP+D3BJ) can topple it over that edge. Weaker asymmetry can also be induced by the presence of the contact-anion and water molecules. I have selected just one solvation model, which includes seven water molecules and an explicit anion. Clearly a more statistical and dynamical approach to the number of waters and their orientation around the norbornyl ring system would sample a much larger set of models. It may be that some of them do again topple the symmetric bridge structure off its delicate perch whilst others retain it. Perhaps this is why the results from the enormous range of solvolysis mechanisms are so difficult to always reconcile. A crystal structure may also be a relatively large perturbation to the solution structure of this species!

The title of one of the last articles published (posthumously) with Paul Schleyer as a co-author[1] is “Norbornyl Cation Isomers Still Fascinate“. True indeed.


This renders refinement using the B2PLYPD3 double-hybrid method[2] an exceptionally slow process, since computing the force constant matrix using this method is very computationally intensive at the selected triple-ζ level.

References

  1. P.V.R. Schleyer, V.V. Mainz, and E.T. Strom, "Norbornyl Cation Isomers Still Fascinate", ACS Symposium Series, pp. 139-168, 2015. https://doi.org/10.1021/bk-2015-1209.ch007
  2. L. Goerigk, and S. Grimme, "Efficient and Accurate Double-Hybrid-Meta-GGA Density Functionals—Evaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions", Journal of Chemical Theory and Computation, vol. 7, pp. 291-309, 2010. https://doi.org/10.1021/ct100466k

Silyl cations?

Thursday, March 23rd, 2017

It is not only the non-classical norbornyl cation that has proved controversial in the past. A colleague mentioned at lunch (thanks Paul!) that tri-coordinate group 14 cations such as R3Si+ have also had an interesting history.[1] Here I take a brief look at some of these systems.

Their initial characterisations, as with the carbon analogues, was by 29Si NMR. The first (of around 25) crystal structures appeared in 1994 (below) and they continue to fascinate to this day. I decided to focus on searching the Cambridge structure database (CSD), using the search query shown below (NM = non-metal). For a planar system the three angles subtended at the Si would of course total to 360°.

The first such structure, published in 1994[2] is shown in 2D representation below

However, the three angles subtended at the Si are 113, 115 and 114°. Could it be that these types of cation are not planar but pyramidal (a ωB97XD/Def2-TZVPP calculation of SiH3+ certainly gives it as planar). Below is a plot of the three angles:

Ringed in red are two systems where all three angles are ~120° (the ones with red dots). The blue circle contains examples where all three angles are <110°. So I took a closer look at the first of these published[2] and known by the code HAGCIB10 (angles of 113, 115 and 114°). The Si appears to be connected to a toluene present in the crystals via an Si-C bond (blue arrow). If correct, that would account for the angles around Si being <120° and indeed closer to tetrahedral, but it would also mean that the species was actually an arenium cation, otherwise known as a “Wheland intermediate”. That extra bond means that it is not a tri-coordinate silicon, but a four-coordinate silicon and that perhaps the indexing in the CSD needs correcting (as was done here).

Looking further, quite a few of the 25 examples contain so-called “N-heterocyclic carbene” ligands, as below (DOI for 3D model: 10.5517/CC12FWM0[3]).

Again one might question the location of the formal +ve charge. Perhaps it might instead reside on the nitrogen as per below, in which case we again do not have a true tri-coordinate silicon cation for systems with such ligands.

This cannot be the whole story, although I would note that Si=C bonds can contain pyramidalised Si. The bonding clearly needs more investigation! 

Very probably each of the 25 examples identified by this search as a silylium or silyl cation has its own story to tell. But in unravelling these stories, one should always perhaps take the 2D representations shown in both the CSD and the original publications with a pinch of salt until other possibly better representations such as the one above are excluded.

References

  1. J.B. Lambert, Y. Zhao, H. Wu, W.C. Tse, and B. Kuhlmann, "The Allyl Leaving Group Approach to Tricoordinate Silyl, Germyl, and Stannyl Cations", Journal of the American Chemical Society, vol. 121, pp. 5001-5008, 1999. https://doi.org/10.1021/ja990389u
  2. J.B. Lambert, S. Zhang, and S.M. Ciro, "Silyl Cations in the Solid and in Solution", Organometallics, vol. 13, pp. 2430-2443, 1994. https://doi.org/10.1021/om00018a041
  3. T. Agou, N. Hayakawa, T. Sasamori, T. Matsuo, D. Hashizume, and N. Tokitoh, "Reactions of Diaryldibromodisilenes with N‐Heterocyclic Carbenes: Formation of Formal Bis‐NHC Adducts of Silyliumylidene Cations", Chemistry – A European Journal, vol. 20, pp. 9246-9249, 2014. https://doi.org/10.1002/chem.201403083