Posts Tagged ‘Anions’

Ammonide: an alkalide formed from ammonia and resembling an electride.

Sunday, December 17th, 2017

Alkalides are anionic alkali compounds containing e.g. sodide (Na), kalide (K), rubidide (Rb) or caeside (Cs). Around 90 examples can be found in the Cambridge structure database (see DOI: 10.14469/hpc/3453  for the search query and results). So what about the ammonium analogue, ammonide (NH4)? A quick search of Scifinder drew a blank! So here I take a look at this intriguingly simple little molecule.

It can be formed by adding two electrons to the ammonium cation; NH4+ + 2e ↠ NH4. One might be encouraged to do this since the LUMO (lowest unoccupied molecular orbital, below) of the ammonium cation has A1 symmetry and so can accept two electrons without the penalty of Jahn-Teller distortions. These electrons will apparently expand the valence electron “octet” around the nitrogen from 8 to 10; a hypervalent species then?

So what are the (calculated) properties of NH4? The energy of the now HOMO (highest occupied molecular orbital) at the ωB97XD/Def2-TZVPPD/solvent=water level is -3.6eV, a respectable electron affinity (the additional electrons are said to be bound). More insight can be obtained from the NBO analysis, which produces localized versions of the molecular orbitals. There are four equivalent NBOs, one of which is shown below.

Each is bonding along one H-N bond, mildly anti-bonding along the other three N-H bonds, but again bonding in the H-H regions! This matches the observations made earlier that when more electrons are pumped into normally valent main group molecules, they will occupy the antibonding levels. This is accompanied by a reduction in the bond orders associated with the central atom. In this case, the N-H bond orders are reduced from 0.79 to 0.602 and the total bond index at the nitrogen is reduced from 3.16 to 2.408. The bond index at hydrogen is at first sight increased from 0.79 to a surprising 1.0003, but this is explained because the H-H bond orders are 0.1328 (three for each H), which brings the H index up to 1.0. The N-H vibration (A1 symmetric) is 3466 cm-1 for NH4+  which is reduced to 2659 for NH4.

So it appears that adding two electrons to the ammonium cation induces H-H bonding! More insight can be obtained from an ELF analysis of the electron density basins.

The above shows four attractors (as they are called) centered at the hydrogen nuclei, with 2.053e each (4*2.053 = 8.212e). The remaining ~2e are located in basins (green) centered at two different types of attractors. One is along the axis of each N-H bond and exo to it (0.316e) and the other sits on top of any set of three hydrogens (0.103e), 1.68e in total. The value of the ELF function at the attractor is shown above. You should realize that ELF=1.0 corresponds to perfectly localized electrons (for which the kinetic energy density is zero) and ELF=0.5 would correspond to a free-electron gas. The ELF value of e.g. 0.77 is getting close to an electron gas, and in fact corresponds to what we call an electride.

So, the nitrogen valence shell electron octet is not actually exceeded! The additional two electrons in ammonide sit beyond the nitrogen, in H-H regions. Whether or not it is a viable species for detection remains to be established, but even its computed bonding properties have proved interesting and it deserves to join the alkalide family. 

Postscript

Ammonide exists in a shallow well in the potential energy surface, shown below, with the dissociation to ammonia and hydride anion being exothermic.

The intrinsic reaction coordinate shows one interesting feature at  IRC ~-1.1 which corresponds to repulsion between the hydride and the lone pair of the nitrogen atom resulting in inversion of configuration during the latter stages of the IRC.


FAIR data collection; 10.14469/hpc/3455. Perhaps unsurprisingly, these values are somewhat basis set dependent. Thus a ωB97XD/Def2-QZVPPD/Water calculation gives the following values: bond index at N, 1.998, N-H bond index, 0.4995, H-H bond index 0.1689, H bond index 1.0062, total Rydberg population, 0.2738, ν(A1) 2686 cm-1. The ELF basins are H, 2.039, exo-basins 0.282 and 0.141 (total 1.692). The improved basis set better describes the diffuse regions beyond the N-H bonds.

Cyclopropenium cyclopentadienide: a strangely neutral ion-pair?

Sunday, April 9th, 2017

Both the cyclopropenium cation and the cyclopentadienide anion are well-known 4n+2-type aromatic ions, but could the two together form an ion-pair?

A search of the Cambridge structure database reveals 52 instances of the cyclopropenium cation with a variety of counter-anions, 77 cyclopentadienide anions with a variety of counter-cations and one (SOWMOG, private communication to CSD) where the two sub-structures are common. The pyridinium-cyclopropenium fragment is actually a di-cation stabilized with dimethylamino substituents, with these charges balanced by two cyclopentadienide anions stabilized with ester substituents. The stacking distance between the ion-pairs is ~3.5-3.6Å, a bit larger than normal π-π stacking distances of 3.2-3.3Å

So could a “pure” cyclopropenium cyclopentadienide ion-pair exist, and if so what would its π-π stacking distance be? A ωB97XD/Def2-TZVPPD/SCRF=water calculation (DOI: 10.14469/hpc/2442) provides one answer to this question; 2.57Å! It is a true minimum in the potential energy surface (all +ve force constants) with a calculated dipole moment of only 7.57D. This species is “only” 27.1 kcal/mol higher in ΔG than the neutral hydrocarbon (DOI: 10.14469/hpc/2443), a difference which is as low as it is because of the gain in aromatic stabilization of two rings upon ion-pair formation.

A few posts back, I was considering candidates for the most polar neutral compound synthesized and I suggested a candidate with a dipole moment of ~22D, based as it happens on cyclopropenium and cyclopentadienide rings directly connected by a bond. So when this bond is removed and the two rings are allowed to stack one above the other, we now have an interesting inversion of the original challenge: what is the least-polar ionic organic compound (ionic in the sense of being an unconnected ion-pair)?

Here are some more properties of this intriguing “neutral” ion-pair.

  1. It has a number of low-frequency modes with correspond to the two rings moving with respect to each other (ν 216 cm-1)
  2. The molecular electrostatic potential illustrates the sense of polarization, with negative region (orange) residing on the 5-membered ring:
  3. The most stable π-type molecular orbital (below) reminds of the π-complex formed in the benzidine rearrangement and that in fact modelling this ion-pair may require a multi-reference (CASSCF) wavefunction, with the single-determinantal one used here only being a first approximation.
  4. A QTAIM analysis of the electron density topology shows only weak “bond” connectors between the two rings, with ρ(r) being typical of weak interactions such as hydrogen bonds.
  5. An ELF (electron localisation function) analysis also holds no surprises, with all the electron density basins (purple) confined to the two rings, just as expected of an ion-pair.
  6. I will leave one further question to a future discussion; what happens to the aromaticity and ring currents of the two individual rings as they combine to form this ion-pair? Might this property be connected to the very close separation between the two rings?

So we have a remarkably “neutral” ionic hydrocarbon to match the “ionic” neutral organic molecules previously discussed. This ion-pair may yet prove to have interesting properties, even if is unlikely to be synthesized without the addition of stabilising substituents.


For example, the stacking distance in graphite is 3.35Å.

Oxane oxide: a tautomer of hydrogen peroxide.

Friday, April 15th, 2016

 If H3N+-O is viable compared with its tautomer H2N-OH when carrying water bridges, then why not try H2O+-O vs HO-OH?

There are no examples to be found in crystal structures! The solvated structure of H2O+-O is modified directly from that of H3N+-Oand the computed (ωB97XD/6-311++G(d,p)/SCRF=water) structure[1] is shown below. Noteworthy is that the hydrogen bonds at the O+ end are far stronger than those to at the O end.

NH3-8

The corresponding hydrated hydrogen peroxide is 16.3 kcal/mol lower in free energy; this compares favourably with the value for water itself and suggests that oxane oxide might also be capable of isolation inside a suitable hydrogen bond stabilising cavity.

References

  1. H.S. Rzepa, "H20O11", 2016. https://doi.org/10.14469/ch/192005